Overview

Jagodzinski

PDZ domains bind the extreme C-terminus of target proteins and are critical components of signaling and trafficking pathways. MotifAnalyzer-PDZ identifies enrichment trends for specific amino acids in a PDZ-binding motif-satisfying sequence across multiple organisms.

Download

Jagodzinski

MotifAnalyzer-PDZ has been developed for, and tested on, Linux and Windows.

Requirements :

  • python 3.0
  • tdqm
  • requests

Downloadable source code :

Sample Invocations

Jagodzinski

MotifAnalyzerPDZ.py is a command-line program that processes and compares C-terminal decameric sequences of one or more FASTA files. See the README.md file in the github repo for full details, and release notes.

Example 1, Linux 
python3 MotifAnalyzer-PDZ.py -organisms organisms.txt -positions 1,3 -numResidues 6 -motifs P0:I P2:ST
 Example 2, Windows 
runInParallel.py -organisms all_organisms.txt -numResidues 6 -motifs P0:WIYAFLVM P2:ST -positions 1,3,5

Contact
& Dev. Team

Jagodzinski
  • Jeanine Amacher, Chemistry, amachej@wwu.edu
  • Filip Jagodzinski, Computer Science, filip.jagodzinski@wwu.edu
  • Robin Cosbey
  • Paul Houser
  • Michael Lee
  • Milo Rupp
  • Jordan Valgardson
  • Raiden van Bronkhorst